Showing posts with label Pleistocene. Show all posts
Showing posts with label Pleistocene. Show all posts

Sunday, April 19, 2009

The Fire Gene Described

A lengthy introduction during the initial post on this topic (available Here) contrasted a harmonious view of nature with the perspective of nature as a series of oppositional organisms struggling to gain a competitive edge over rivals. As a model of this outlook, the ecotone boundaries between various sets of differing plant communities were offered as a case study. More specifically, the prairie, savanna and hardwood hammock ecosystems of the Big Cypress Preserve were forwarded along with the proposition that members of these communities actively challenged each other for limited resources. In staging this proposition the question was asked, “Why don’t trees invade - and take over – the prairie communities currently occupied by grasses?” After eliminating the likelihood that densely growing stands of grass crowded-out young saplings by denying them access to sunlight, cyclic wildfire were explained and presented as an alternative explanation. Moving forward with this production, a profile of one of the previously introduced characters is in order – the conifer tree Pinus elliotti.

Slash Pine Growing from a Log

Slash Pine is a species of the genus Pinus (pine tree) which branched from genus Picea (spruce tree) during the Cretaceous Period, somewhere between 87 and 193 million years ago. There are two distinct varieties of slash pine, variety elliotti and variety densa, although there are several important distinctions, for purposes here both varieties can be considered one and the same. Pine and spruce trees are grouped together with cycads, gnetophytes and ginkgo as gymnosperms, which had a start back in the Pennsylvanian Period of the Carboniferous more than 300 million years ago. The long history of the pine trees, and the slash pine in particular, is significant because these trees have one of the largest and most complex genomes of any organism on the planet today – a result of varied evolutionary forces. Of specific interest in regards to evolutionary history is that gymnosperms arose from the Carboniferous swamps during a period of rapid plant adaptation. In addition to the advent of the bark fiber “lignin,” plants during that period underwent a multitude of morphological changes - many of these changes were adaptations to wildfire. Unlike the 21% atmospheric oxygen present today, the carboniferous boasted 35% oxygen content, this in conjunction with an abundance of herbaceous material (remember Carboniferous = “coal age”) resulted in frequent – and intense – wildfires.

Wildfires…

So, do wildfires prevent trees, such as slash pine, from invading prairie strongholds held by grasses? Not really, some especially intense (“intensity” being a measure of a fire’s maximum temperature and duration) wildfires may destroy slash pine, but fires capable of doing so are relatively rare. The typical “fire seasons,” as described in the first post, may have sufficient intensity to kill some young saplings, but remember - slash pines also have “initial rapid growth genes” which provide a solid head start in defending themselves. Essentially, any sapling greater than two years old has a good chance of getting through the “average” wildfire. As for the periodic “non-average” wildfire, one that is of an unusually high intensity, slash pines may need to rely on evolutionary adaptations other than “initial rapid growth genes” – they may need to lean on morphological phenotypes resulting from a “fire gene.”

A fire gene is a genetic compliment possessed by an organism that is expressed in such a manner that the presence of fire improves the likelihood of that genotype being passed on to future generations. In other words, if a population of trees exists in which some members have a genotype that provides phenotypical resistance to fire, and that population is then exposed to fire, killing a certain percentage of the population, those trees with fire gene advantage will have higher survivability and greater measures of fitness than will those not possessing a fire gene. Through this process of “selection by fire,” the fire gene would become more prevalent in the population, eventually becoming so common as to be called characteristic.

This is precisely what has occurred with the pine trees of the Big Cypress. Through millennia of “trial by fire,” only those trees expressing the most fire tolerant phenotypes have survived. Morphological features such as thickly armored plates of bark shield the trunk from heat, scale plated meristems guard against flames and the pine’s reproductive strategies take into account spring fires by germinating in the fall and producing periodic mast crops. However, these products of natural selection are merely defenses, what is truly remarkable is that another aspect of the fire gene contributes to offensive maneuvers.

As a thought experiment only, image being a tree with the cognitive function of a human and the knowledge that you have an inherit resistance to fire; a resistance that many of your competitors do not posses. If locked in a battle for survival, and you had a match in hand, (or rather, a match in “branch”) would you start a fire?

Of course, matches are of little use to trees outside of thought experiments, but what if there was an adaptation that would provide not only defense, but also allow trees to harness naturally occurring fires to their advantage? Genes don’t exist in isolation; frequently they form partnerships to gain mutual advantage. Epistasis, the interaction between genes, has occurred in pine trees to accomplish the same goal. Not only do the trees have defensive morphologies, they have also adapted the chemistry of their leaves (i.e. pine needles) such that while on the tree the leaves produce flame resistant chemicals, but when wildfires are absent for extended periods of time leaf chemistry changes. In the absence of wildfires leaves are randomly shed, accumulate in the area around the tree and - as opposed to being flame retardant - they become easily ignited at low temperatures and burn at an intensity that, well… An intensity that only a slash pine would love…

Some fires do adversely affect slash pine, but the presence of a “fire gene” provides both defensive and offensive adaptations that can –and have been – utilized to survive. So, why don’t trees such as slash pines invade prairies? It’s a “one-two punch.” Through heat stressing the trees, fires slow down advancing slash pines; however it is what happens after the fire season that stops them cold in their tracks – flooding. Summer rains pile on additional stress to what has already accumulated due to fire defense investment. Grasses are in the same boat, but due to a better water tolerance they can bounce back more readily. The slash pine can survive fires or flood, but taken together these two modes of environmental disturbance overwhelm the trees and limit their prairie-ward charge. This is, however, a function of seasonality, climate and cyclic wildfires; with climate change and alteration of these natural processes all bets are off. (But that’s a topic for another time…)

Beckage, B., Gross, L., & Platt, W. (2006). Modelling responses of pine savannas to climate change and large-scale disturbance Applied Vegetation Science, 9 (1) DOI: 10.1658/1402-2001(2006)9[75:MROPST]2.0.CO;2

Nordlund, D., & Lewis, W. (1976). Terminology of chemical releasing stimuli in intraspecific and interspecific interactions Journal of Chemical Ecology, 2 (2), 211-220 DOI: 10.1007/BF00987744

Morse, A., Peterson, D., Islam-Faridi, M., Smith, K., Magbanua, Z., Garcia, S., Kubisiak, T., Amerson, H., Carlson, J., Nelson, C., & Davis, J. (2009). Evolution of Genome Size and Complexity in Pinus PLoS ONE, 4 (2) DOI: 10.1371/journal.pone.0004332

Platt, W. J., J. M. Huffman, M. G. Slocum, and B. Beckage. In press. Fire regimes and trees in Florida dry prairie landscapes. In: Noss, R. & Singh, S. (eds.) Land of fire and water: The Florida dry prairie ecosystem. Avon Park Air Force Range and Department of Defense, Avon Park, FL,

US.Kabrick, John M.; Dey, Daniel C.; Gwaze, David, eds. Shortleaf pine restoration and ecology in the Ozarks: proceedings of a symposium; 2006 November 7-9; Springfield, MO. Gen. Tech. Rep. NRS-P-15. Newtown Square, PA: U.S. Department of Agriculture, Forest Service, Northern Research Station: 28-32.

Saturday, April 18, 2009

The Fire Gene: One Organism’s Ability to Exploit Fire


Gazing across the tranquil landscape of the Big Cypress Preserve, nature seems to be in balance, unchanging and at peace - picturesque beyond any poetic description. Here, anthropogenic throngs of sharply angled concrete and glass edifices suspend their battle for roadside dominance and yield themselves to a sea of sparsely treed savanna, rolling prairies of grass, and randomly scattered islands of thickly vegetated hammocks; the perfect environment for a relaxing stroll, a picnic, or even a quick nap. All may appear calm within this enchanting panorama; however, the perceived tranquility is but a chimera. A mere illusion of serenity resulting from shortfalls in the ability of Homo sapiens’ photoreceptors to see beyond the narrow range of the electromagnetic spectrum called visible light, an inability to hear sound outside of 22000 Hertz, and the failure of the human olfactory system to nose its way into the vast chemo-landscape of pheromones and other volatile chemicals in which it is continuously assailed. If the sensory apparatus of Homo sapiens was keener - more finely calibrated – the landscape of the Big Cypress would appear very different.

Very different indeed, imagine the ecological interplay that could be interpreted if humans could see ultraviolet light through the eyes of a bee, smell pheromones from six-miles’ distance like a moth, or interpret chemical stimuli through soil like a plant… Far from serene, if viewed through time, adaptive maneuvers, survival strategies and arms races would be manifest in every action undertaken by the immense diversity of organisms on Earth. If these actions could be viewed more directly, the landscape would appear saturated with war. Even the plant community boundaries which demarcate prairie from savanna from hammock in the above described landscape are maintained by way of fierce battles waged over evolutionary time. These ecosystems, which appear stable and so pleasingly haphazardly scattered, are in fact tightly ordered armies of competing plants struggling for resources and existence. In these recurrent ecotonal conflicts one species has honed a new weapon – it has adapted to exploit the power of fire.

Naturally existing plant communities exist in a continuum of ecosystems which through evolution have adapted to almost every available habitat on the planet; from “box thorns” (Lycium pallidum) in Death Valley to fully aquatic hyacinths (Eichhornia paniculata) floating around the lakes of Brazil, genetic plasticity in plants is the product of natural selection. Although diverse habitats represent a surmountable challenge, a multitude of both biotic and abiotic factors determine the overall abundance (density), composition (diversity) and ultimate success of plant communities at any given location.

For example, looking across the landscape of the Big Cypress, densely concentrated hardwood trees form hammocks which, due to the broad area of their collective canopies, limit the amount of sunlight available to underlying herbaceous groundcover. This is a straight forward relationship - no sun reaching the ground means fewer plants on the ground. Following this rationale, if the tree canopy should be opened (by a storm, hurricane or by the death of older trees) and sunlight is able to temporarily penetrate to the floor, a rapid emergence of both herbaceous plants and new saplings would be predicted. This is precisely what happens; sunlight is the limiting resource, once made available, those plants best able to take advantage of the situation (through rapid growth) will be able to literally overshadow their competitors; plants with genetic compliments favoring a period of “initial rapid growth” are at an advantage and will be positively selected.

Extrapolating this scenario to the prairies of Big Cypress begs the question – why aren’t there any trees in the prairie?

Prairies, typically found on relatively low topographical gradients in Florida, have an abundance of soil nutrients and water; at least enough to support the enormous quantity of grasses and herbaceous plants currently found there. Additionally, from the perspective of a tree, grasses present little competition for sunlight. So, what is it that prevents trees from invading the prairie?

One often suggested possibility is that because prairies are occupied by dense populations of grasses - some of which more than six feet in height - young trees are prevented from taking hold; sort of like a reverse hammock scenario in which the grasses overshadow the young trees thereby starving them of sunlight instead of vice versa… This is plausible, but why wouldn’t trees take hold after wildfires? Wildfires have been historically inevitable in Florida and have the effect of clearing grasses long enough for those trees possessing an “initial rapid growth gene” in their arsenals to stake a claim.

Slash Pine (Pinus elliotti), for example, has just such an initial rapid growth gene. This permits the tree to take advantage of any opportunity to seize real estate, whether it is in a forest or a prairie. Slash Pine is even capable of expressing secondary needles in less than six month’s time – seedlings grow rapidly. Once present, this conifer could easily out-compete grasses for sunlight.

A quick word about wildfires: Florida’s climate cycle is punctuated by alternating dry and wet periods. November to February is the dry season, with relatively little precipitation, and is followed by heavy rains and thunderstorms (particularly near the coasts) during the months of June, July and August. The spring season, February through May, represents a transition from dry to wet, but during this period lightening strikes often cause wildfires due to the parched conditions of plants – parched, having just come out of the dry season. Regularity of climate has resulted in a cyclic “fire season” arriving during the early spring.

Speaking of wildfires… Being a regular occurrence, they are often offered as another explanation for limiting the advance of trees into prairies. Although this suggestion is partially correct, it isn’t the whole story - in some instances trees have even wielded fire as a weapon to destroy its grass competitors.


4-19-09 UPDATE: The Second Half of this Post can be Viewed HERE.

Beckage, B., Gross, L., & Platt, W. (2006). Modelling responses of pine savannas to climate change and large-scale disturbance Applied Vegetation Science, 9 (1) DOI: 10.1658/1402-2001(2006)9[75:MROPST]2.0.CO;2


Nordlund, D., & Lewis, W. (1976). Terminology of chemical releasing stimuli in intraspecific and interspecific interactions Journal of Chemical Ecology, 2 (2), 211-220 DOI: 10.1007/BF00987744

Morse, A., Peterson, D., Islam-Faridi, M., Smith, K., Magbanua, Z., Garcia, S., Kubisiak, T., Amerson, H., Carlson, J., Nelson, C., & Davis, J. (2009). Evolution of Genome Size and Complexity in Pinus PLoS ONE, 4 (2) DOI: 10.1371/journal.pone.0004332

Platt, W. J., J. M. Huffman, M. G. Slocum, and B. Beckage. In press. Fire regimes and trees in Florida dry prairie landscapes. In: Noss, R. & Singh, S. (eds.) Land of fire and water: The Florida dry prairie ecosystem. Avon Park Air Force Range and Department of Defense, Avon Park, FL,

US.Kabrick, John M.; Dey, Daniel C.; Gwaze, David, eds. Shortleaf pine restoration and ecology in the Ozarks: proceedings of a symposium; 2006 November 7-9; Springfield, MO. Gen. Tech. Rep. NRS-P-15. Newtown Square, PA: U.S. Department of Agriculture, Forest Service, Northern Research Station: 28-32.

Wednesday, April 8, 2009

Omnivorous Pleistocene Bears Give Clues to Adaptation

By comparing the morphological features of Pleistocene bear fossils (Arctodus simus and Ursus spelaeus) with that of modern bears, scientists report that analogous cranio-mandibular structures indicate that even the prehistoric hyper carnivores had omnivorous tendencies.

These and other findings provide clues as to the niche plasticity and the ability of mammals to adapt to fluctuating climates.



'Knowing what the extinct bears ate is of utmost relevance to finding out about the evolution of carnivore niches in the Pleistocene when climatic conditions were changing', explains Borja Figueirido, lead author of the study and researcher for the Ecology and Geology Department of the Faculty of Sciences at the University of Málaga.



Figure Above: Landmarks used for describing cranial and mandibular shape. Cranium: (1) most postero-dorsal border of the canine alveolus, (2) most antero-dorsal border of the canine alveolus, (3) most antero-dorsal border of the I3, (4) most anterior edge of the nasal bones, (5) dorsal outline directly superior to post-orbital process, (6) dorsal outline directly superior to the end of the zygomatic arch, (7) most postero-ventral point of the occipital crest, (8) intersection between the occipital condyle and the occiput, (9) intersection between the occipital condyle and the paraoccipital process, (10) ventral tip of postglenoid process, (11) posterior edge of the upper tooth row, (12) point between the upper carnassial and the first upper molar, (13) anterior edge of the upper tooth row, (14) postero-dorsal border of the zygomatic arch, (15) dorsal tip of the frontal process of the zygomatic arch, (16) orbit midheigth, (17) ventral tip of the post-orbital process, (18) ventral intersection between the zygomatic arch and the axilla.Mandible: (1) antero-dorsal border of the incisive alveolus, (2) postero-dorsal border of the canine alveolus, (3) intersection between the trigonid/talonid notch of the lower carnassial and the dorsal border of the alveolus of this tooth, (4) posterior edge of the lower tooth row, (5) posterior edge of the coronoid process, (6) most posterior edge of the articular surface condyle, (7) tip of angular process, (8) ventral outline below the mesial end of the tooth row, (9) ventral outline below the trigonid/talonid notch of the lower carnassial, (10) most ventral point of the symphyseal region. Scale bar equals 5 cm. Deviations of the specimens analyzed from the consensus configuration of landmarks are shown.



Read the research article published in the Journal of Zoology - HERE.



Figueirido, B., Palmqvist, P., & Pérez-Claros, J. (2009). Ecomorphological correlates of craniodental variation in bears and paleobiological implications for extinct taxa: an approach based on geometric morphometrics Journal of Zoology, 277 (1), 70-80 DOI: 10.1111/j.1469-7998.2008.00511.x