Friday, May 8, 2009

Wetland Plant of the Week #16

Spiranthes praecox




"lady's tresses"

Spiranthes praecox is one of approximately 12 species of Spiranthes found in Florida. They’re single stemmed, non-epiphytic, perennial orchids with basal “grass-like” leaves and small white flowers arranged along a spiral central axis.

Photographed yesterday near the Ochlockonee River Wildlife Management Area in Leon County, Florida.

Here is a nifty video from Louisiana State University describing the anatomy and habitat of Spiranthes praecox:





Saturday, May 2, 2009

The Blitzkrieg of Ungulates in Levant

The region of the Middle East referred to as “Levant” includes modern day Israel, Palestine and Jordon, and there are few places on earth more intensely studied by archaeologists than the birthplace of monotheistic religion. In addition to yielding a vast record of human occupation, culture and war, the archaeological sites within this region also document the decimation of several mammalian species. A couple of days ago (April 29), several Israeli scientists published an article in PLoS One in which they identified human driven overkill as the primary cause of regional extinction in several species of ungulates.

Through examination of vertebrate remains associated with the archaeological sites of Levant, scientists were able to piece together patterns of ungulate biogeography that point to over hunting and environmental degradation as the impetus for the extinction of hartebeests, aurochs, hippopotami and several species of deer. Additionally, a direct correlation was found between the body mass of the hunted species and the rate at which the animal went extinct – presumably, larger animals were of greater value (provided more meat) and were easier to hunt (bigger = slower).


Figure: Body mass of ungulates that became extinct at end of Iron Age (by 586 BCE), at end of Mamluk period (12th century CE), at end of 19th century CE, as well as body mass of extant ungulate species. Three species became extinct during the Iron Age (1,Hippopotamus amphibius; 2, Bos primigenius; 3, Alcelaphus buselaphus), one species during the 12th century CE (4, Cervus elaphus), and six species during the 19th century CE (5, Dama mesopotamica; 6, Capra aegagrus; 7, Capreolus capreolus; 8, Gazella subgutturosa; 18 9, Equus hemionus; 10, Oryx leucoryx). Four species still exist (11, Sus scrofa; 12,Gazella gazelle; 13, Capra ibex nubiana; 14, Gazella dorcas). Because only one species become extinct during the 12th century this period could not be included in the ANOVA analysis. Horizontal broken line indicates average body mass of the 14 ungulates in Natufian Period (13,000–9,500 years BCE). Letters above bars indicate a significant difference between groups (Bonferroni Multiple Comparison Test, P,0.05). doi:10.1371/journal.pone.0005316.g011


According to the researchers, “It thus appears that during the Holocene period in the southern Levant, the most important causes of ungulate extinctions were habitat destruction and uncontrolled hunting.” They further detail, “Based on the data of this study we assume that overkill in the southern Levant operated in two stages: 1) slow overkill by ancient hunting methods, that caused the disappearance of the larger species and 2) modern blitzkrieg, which was made possible by the use of modern firearms, such blitzkrieg differed drastically from the prehistoric hunting of naive large fauna in other continents and islands, where human hunters were never encountered.”



Tsahar, E., Izhaki, I., Lev-Yadun, S., & Bar-Oz, G. (2009). Distribution and Extinction of Ungulates during the Holocene of the Southern Levant PLoS ONE, 4 (4) DOI: 10.1371/journal.pone.0005316

What's New with the CERN Supercollider

Quick Talk: What went wrong (and what's next) at the Large Hadron Collider

Great Quote at the End!


Monday, April 27, 2009

Wetland Plant of the Week #15

Batis maritima

"Saltwort"


Obligate, succulent herb found throughout coastal Florida. Leaves are cylindrical, fleshy and oppposite. Often found in mangrove swamps, tidal areas and salt marshes.

This one was photographed last week - adjacent to Wetland Plant of the Week #14 in Levy County, Florida.

Sunday, April 26, 2009

Impressive morphology – I’m lichen it!

A couple of snapshots from earlier in the week showing a highly filamented foliose lichen - Parmotrema perforatum. (Found in proximity to the scorpion posted previously)



Lichens have traditionally been referred to as a prime example of a symbiotic relationship. Each lichen consists of an intimate association between a fungus and a species of algae. The algae within the lichen photosynthesize, providing food for both symbionts. The fungus protects the alga from harmful light intensities, produces a substance that accelerates photosynthesis in the algae, and absorbs and retains water and minerals for both organisms. There is physiological and ultrastructural evidence that suggests the fungus parasitizes the algae in a controlled fashion and, in some instances, actually destroys the algal cells. There are about 25,000 species of lichens known and they are capable of living in environmental conditions that kill most other forms of life.


Although lichens can reproduce sexually, they are predominantly asexual reproducers. In the latter case, small powdery clusters of hyphae and algae, called soredia are formed and cut off from the thallus as it grows. These soredia are dispersed by wind or water and take up residence elsewhere. Sexual reproduction occurs when the fungal ascomata produce spores which germinate and parasitize independently living algae upon contact with them. Lichen algae reproduce by mitosis and simple cell division.


[Lichen overview from the Encyclopedia of the Earth]



.

As a side note, one lichen has been in the news recently- "newfound lichen species named for Barack Obama" - Caloplaca obamae


How Discriminating Ants Choose

In addition to merging sci-fi art with the reality of science ('tagged ant' image below), researchers at the School of Biological Sciences within the University of Bristol have demonstrated that the ‘irrationality’ associated with contextual decision making is avoided in the ant Temnothorax albipennis as it chooses between alternative nesting sites.
Tagged Ant!

As the article "Do ants make direct comparisons?" explains, Temnothorax albipennis makes a collective decision when a colony emigrates to a new nest. Scouting ants that discover new nests assess them on the basis of multiple attributes. Some of these scouts subsequently recruit nest-mates to the new nest using tandem-running, where an informed ant leads a second ant to her destination. When the number of ants in the new nest reaches a quorum, scouts begin rapid transport of the rest of the colony by carrying nest-mates and brood. Colonies are able to choose the best of several nests. Two individual-level mechanisms for this collective choosiness have been identified. Some ants visit both nest sites, and subsequently recruit only to the better site, which has been taken as evidence for direct comparison. However, ants that visit only one site still contribute to the colony decision, by starting to recruit earlier (i.e. using a shorter recruitment latency) when a nest is of higher quality.

According to Elva Robinson, "Each ant appears to have its own 'threshold of acceptability' against which to judge a nest individually. Ants finding the poor nest were likely to switch and find the good nest, whereas ants finding the good nest were more likely to stay committed to that nest. When ants switched quickly between the two nests, colonies ended up in the good nest. Individual ants did not need to comparatively evaluate both nests in order for the entire colony to make the correct decision.

On the other hand, animals – including humans – who use comparative evaluation frequently make 'irrational' decisions, due to the context in which options are compared or by inconsistently ranking pairs of options, (for example option A preferred to B, B preferred to C but C preferred to A).

The ants' threshold rule makes an absolute assessment of nest quality that is not subject to these risks, and circumvents the necessity for memorization and comparison of every site visited. Thus, simple individual behavior substitutes for direct comparison, facilitating effective choice between nest sites for the colony as a whole."


Specimen: CASENT0173192Species: Temnothorax albipennis

Photographer: April NobileDate Uploaded: 08/09/2007

Copyright: California Academy of Sciences, 2000-2007



Specimen: CASENT0173192Species: Temnothorax albipennis

Photographer: April NobileDate Uploaded: 08/09/2007

Copyright: California Academy of Sciences, 2000-2007




Robinson, E., Smith, F., Sullivan, K., & Franks, N. (2009). Do ants make direct comparisons? Proceedings of the Royal Society B: Biological Sciences DOI: 10.1098/rspb.2009.0350

Saturday, April 25, 2009

Hyperbolic Geometry and Corals

This video relates to the coral bleaching post made yesterday - Resilience in Acropora Corals


Margaret Wertheim: The beautiful math that links coral, crochet and hyperbolic geometry


Snapshots from the Field

A couple of the ecosystems visited this week, and a representative inhabitant from each...


Pine Flatwoods


Centruroides vittatus - the "striped bark scorpion"

Same specimen in both pictures; on the left she's sitting on my map, and to the right she's demonstrating her camouflage ability.






Salt Marsh



Menippe mercenaria - the "stone crab"

Friday, April 24, 2009

Resilience in Acropora Corals

Great news - local management of water quality and other factors may significantly contribute to the survivability of coral reefs that have been negatively impacted by climate change.

A massive bleaching event took place on the Great Barrier Reef approximately three years ago and devastated a huge number of inshore reefs, but the Acropora corals made an unprecedented comeback – in only a year’s time!

According to Guillermo Diaz-Pulido, three critical factors contributed to this unprecedented turn around, “first was exceptionally high re-growth of fragments of surviving coral tissue. The second was an unusual seasonal dieback in the seaweeds, and the third was the presence of a highly competitive coral species, which was able to outgrow the seaweed. But this also all happened in the context of a well-protected marine area and moderately good water quality.”

Sophie Dove of the Centre for Marine Studies and Australian Research Council Centre of Excellence for Coral Reef Studies points-out that, “The exceptional aspect was that corals recovered by rapidly regrowing from surviving tissue. Recovery of corals is usually thought to depend on sexual reproduction and the settlement and growth of new corals arriving from other reefs. This study demonstrates that for fast-growing coral species asexual reproduction is a vital component of reef resilience.”

Coral recovery following algal overgrowth
(Images from Artcle)

Branches of Acropora corals died after bleaching and were subsequently colonized by a variety of benthic algae. Remnant coral tissue at the base of the coral colonies regrew upward and deposited new skeleton along the old dead coral branch, overgrowing

A) algal turfs (arrows). B) fleshy seaweed Lobophora variegata.

C) crustose coralline algae. D) Coral tissue has all but completely overgrown the colonizing algae.


E) Thin section of coral showing benthic algae sandwiched between old coral skeleton and a thin layer of new skeleton. Examination using a compound microscope showed that coral tissue overgrew a range of algal types.

Ove Hoegh-Guldberg of CoECRS and The University of Queensland suggests, “...that managing local stresses that affect reefs such as overfishing and declining water quality can have a big influence on the trajectory of reefs under rapid global change.”

Read the Article from PLoS One - HERE



Diaz-Pulido, G., McCook, L., Dove, S., Berkelmans, R., Roff, G., Kline, D., Weeks, S., Evans, R., Williamson, D., & Hoegh-Guldberg, O. (2009). Doom and Boom on a Resilient Reef: Climate Change, Algal Overgrowth and Coral Recovery PLoS ONE, 4 (4) DOI: 10.1371/journal.pone.0005239

Wetland Plant of the Week #14

Salicornia virginica

"Glasswort"

Obligate, succulent plant with rounded leaves fused to a fleshy jointed stem, salt tolerant and found in salt and brackish marshes.



Photographed earlier this week in Yankeetown, Florida.

Monday, April 20, 2009

Apis mellifera

Apis mellifera


Wing veination ditinguihes Honey Bees from Bumble Bees. This one was next to my mail box; common, but cool none-the-less...

Sunday, April 19, 2009

The Fire Gene Described

A lengthy introduction during the initial post on this topic (available Here) contrasted a harmonious view of nature with the perspective of nature as a series of oppositional organisms struggling to gain a competitive edge over rivals. As a model of this outlook, the ecotone boundaries between various sets of differing plant communities were offered as a case study. More specifically, the prairie, savanna and hardwood hammock ecosystems of the Big Cypress Preserve were forwarded along with the proposition that members of these communities actively challenged each other for limited resources. In staging this proposition the question was asked, “Why don’t trees invade - and take over – the prairie communities currently occupied by grasses?” After eliminating the likelihood that densely growing stands of grass crowded-out young saplings by denying them access to sunlight, cyclic wildfire were explained and presented as an alternative explanation. Moving forward with this production, a profile of one of the previously introduced characters is in order – the conifer tree Pinus elliotti.

Slash Pine Growing from a Log

Slash Pine is a species of the genus Pinus (pine tree) which branched from genus Picea (spruce tree) during the Cretaceous Period, somewhere between 87 and 193 million years ago. There are two distinct varieties of slash pine, variety elliotti and variety densa, although there are several important distinctions, for purposes here both varieties can be considered one and the same. Pine and spruce trees are grouped together with cycads, gnetophytes and ginkgo as gymnosperms, which had a start back in the Pennsylvanian Period of the Carboniferous more than 300 million years ago. The long history of the pine trees, and the slash pine in particular, is significant because these trees have one of the largest and most complex genomes of any organism on the planet today – a result of varied evolutionary forces. Of specific interest in regards to evolutionary history is that gymnosperms arose from the Carboniferous swamps during a period of rapid plant adaptation. In addition to the advent of the bark fiber “lignin,” plants during that period underwent a multitude of morphological changes - many of these changes were adaptations to wildfire. Unlike the 21% atmospheric oxygen present today, the carboniferous boasted 35% oxygen content, this in conjunction with an abundance of herbaceous material (remember Carboniferous = “coal age”) resulted in frequent – and intense – wildfires.

Wildfires…

So, do wildfires prevent trees, such as slash pine, from invading prairie strongholds held by grasses? Not really, some especially intense (“intensity” being a measure of a fire’s maximum temperature and duration) wildfires may destroy slash pine, but fires capable of doing so are relatively rare. The typical “fire seasons,” as described in the first post, may have sufficient intensity to kill some young saplings, but remember - slash pines also have “initial rapid growth genes” which provide a solid head start in defending themselves. Essentially, any sapling greater than two years old has a good chance of getting through the “average” wildfire. As for the periodic “non-average” wildfire, one that is of an unusually high intensity, slash pines may need to rely on evolutionary adaptations other than “initial rapid growth genes” – they may need to lean on morphological phenotypes resulting from a “fire gene.”

A fire gene is a genetic compliment possessed by an organism that is expressed in such a manner that the presence of fire improves the likelihood of that genotype being passed on to future generations. In other words, if a population of trees exists in which some members have a genotype that provides phenotypical resistance to fire, and that population is then exposed to fire, killing a certain percentage of the population, those trees with fire gene advantage will have higher survivability and greater measures of fitness than will those not possessing a fire gene. Through this process of “selection by fire,” the fire gene would become more prevalent in the population, eventually becoming so common as to be called characteristic.

This is precisely what has occurred with the pine trees of the Big Cypress. Through millennia of “trial by fire,” only those trees expressing the most fire tolerant phenotypes have survived. Morphological features such as thickly armored plates of bark shield the trunk from heat, scale plated meristems guard against flames and the pine’s reproductive strategies take into account spring fires by germinating in the fall and producing periodic mast crops. However, these products of natural selection are merely defenses, what is truly remarkable is that another aspect of the fire gene contributes to offensive maneuvers.

As a thought experiment only, image being a tree with the cognitive function of a human and the knowledge that you have an inherit resistance to fire; a resistance that many of your competitors do not posses. If locked in a battle for survival, and you had a match in hand, (or rather, a match in “branch”) would you start a fire?

Of course, matches are of little use to trees outside of thought experiments, but what if there was an adaptation that would provide not only defense, but also allow trees to harness naturally occurring fires to their advantage? Genes don’t exist in isolation; frequently they form partnerships to gain mutual advantage. Epistasis, the interaction between genes, has occurred in pine trees to accomplish the same goal. Not only do the trees have defensive morphologies, they have also adapted the chemistry of their leaves (i.e. pine needles) such that while on the tree the leaves produce flame resistant chemicals, but when wildfires are absent for extended periods of time leaf chemistry changes. In the absence of wildfires leaves are randomly shed, accumulate in the area around the tree and - as opposed to being flame retardant - they become easily ignited at low temperatures and burn at an intensity that, well… An intensity that only a slash pine would love…

Some fires do adversely affect slash pine, but the presence of a “fire gene” provides both defensive and offensive adaptations that can –and have been – utilized to survive. So, why don’t trees such as slash pines invade prairies? It’s a “one-two punch.” Through heat stressing the trees, fires slow down advancing slash pines; however it is what happens after the fire season that stops them cold in their tracks – flooding. Summer rains pile on additional stress to what has already accumulated due to fire defense investment. Grasses are in the same boat, but due to a better water tolerance they can bounce back more readily. The slash pine can survive fires or flood, but taken together these two modes of environmental disturbance overwhelm the trees and limit their prairie-ward charge. This is, however, a function of seasonality, climate and cyclic wildfires; with climate change and alteration of these natural processes all bets are off. (But that’s a topic for another time…)

Beckage, B., Gross, L., & Platt, W. (2006). Modelling responses of pine savannas to climate change and large-scale disturbance Applied Vegetation Science, 9 (1) DOI: 10.1658/1402-2001(2006)9[75:MROPST]2.0.CO;2

Nordlund, D., & Lewis, W. (1976). Terminology of chemical releasing stimuli in intraspecific and interspecific interactions Journal of Chemical Ecology, 2 (2), 211-220 DOI: 10.1007/BF00987744

Morse, A., Peterson, D., Islam-Faridi, M., Smith, K., Magbanua, Z., Garcia, S., Kubisiak, T., Amerson, H., Carlson, J., Nelson, C., & Davis, J. (2009). Evolution of Genome Size and Complexity in Pinus PLoS ONE, 4 (2) DOI: 10.1371/journal.pone.0004332

Platt, W. J., J. M. Huffman, M. G. Slocum, and B. Beckage. In press. Fire regimes and trees in Florida dry prairie landscapes. In: Noss, R. & Singh, S. (eds.) Land of fire and water: The Florida dry prairie ecosystem. Avon Park Air Force Range and Department of Defense, Avon Park, FL,

US.Kabrick, John M.; Dey, Daniel C.; Gwaze, David, eds. Shortleaf pine restoration and ecology in the Ozarks: proceedings of a symposium; 2006 November 7-9; Springfield, MO. Gen. Tech. Rep. NRS-P-15. Newtown Square, PA: U.S. Department of Agriculture, Forest Service, Northern Research Station: 28-32.